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EDTSurf - quick and accurate construction of macromolecular surfaces

USAGE:(1) User Commands USAGE:(1)

NAME

EDTSurf - quick and accurate construction of macromolecular surfaces

SYNOPSIS

EDTSurf -i pdbname ...

DESCRIPTION

EDTSurf is a open source program to construct triangulated surfaces for macromolecules. It generates three major macromolecular surfaces: van der Waals surface, solvent-accessible surface and molecular surface (solvent-excluded surface). EDTsurf also identifies cavities which are inside of macromolecules.

OPTIONS

-o outname
-t 1-MC 2-VCMC
-s 1-VWS 2-SAS 3-MS 4-SES
-c 1-pure 2-atom 3-chain
-p probe radius [0,2.0]
-f scale factor (0,20.0]
-h 1-in and out 2-out 3-in
output1: outname.ply
output2: outname.asa
output3: outname-cav.pdb
January 2014 EDTSurf