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R_mds - project distance matrix into lower number of dimensions

R_MDS(1) User Commands R_MDS(1)

NAME

R_mds - project distance matrix into lower number of dimensions

SYNOPSIS

R_mds -k <filtered_kmers.txt> -p <pheno_file>

DESCRIPTION

Projects distance matrix into lower number of dimensions Requires R and rhdf5 to be installed, see github wiki for more details

OPTIONS

Required

-d, --dist
Distance matrix output by kmds
-p, --pheno
Phenotype file used by seer

Optional

-o, --output
Output prefix (default 'all_structure')
--pc
Number of dimensions to project into (default 3)
-R
R executable (default 'which R')
-h, --help
Displays this message

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
March 2017 R_mds 1.1.2