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STAR - ultrafast universal RNA-seq aligner

STAR(1) User Commands STAR(1)

NAME

STAR - ultrafast universal RNA-seq aligner

DESCRIPTION

Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy.

SYNOPSIS

STAR --option1-name option1-value(s)--option2-name option2-value(s) ...

SEE ALSO

This manpage is only a placeholder. You can get extensive information by using
see /usr/share/doc/rna-star/STARmanual.pdf
January 2015 STAR 2.4.0i