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VFDB_cdhit_to_csv - Parse cdhit results

VFDB_CDHIT_TO_CSV(1) User Commands VFDB_CDHIT_TO_CSV(1)

NAME

VFDB_cdhit_to_csv - Parse cdhit results

SYNOPSIS

VFDB_cdhit_to_csv [-h] --cluster_file CLUSTER_FILE --infile INFILE --outfile OUTFILE

DESCRIPTION

This tool is part of the SRST2 suite.
Output a comma-separated table of alleles, their inferred gene name (from annotation) and their 90% cluster from CD-HIT analysis

OPTIONS

optional arguments:

-h, --help
show this help message and exit
--cluster_file CLUSTER_FILE
cd hit output file (.clstr)
--infile INFILE
raw sequences file that was input to cdhit (fasta)
--outfile OUTFILE
output file (csv)

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
June 2016 VFDB_cdhit_to_csv 0.1.8