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WarpTimeSeriesImageMultiTransform - part of ANTS registration suite

WARPTIMESERIESIMAGEMULTITRANSFORM(1) User Commands WARPTIMESERIESIMAGEMULTITRANSFORM(1)

NAME

WarpTimeSeriesImageMultiTransform - part of ANTS registration suite

DESCRIPTION

Usage 1 (Forward warp): WarpTimeSeriesImageMultiTransform ImageDimension <moving_image.ext> <output_image.ext> -R <fixed_image.ext> <MyWarp.ext> <MyAffine.txt> [interpolation]
Usage 2 (Inverse warp): WarpTimeSeriesImageMultiTransform ImageDimension <fixed_image.ext> <output_image.ext> -R <moving_image.ext> -i <MyAffine.txt> <MyInverseWarp.ext> [interpolation]
Usage Information
ImageDimension
: 3 or 4 (required argument).
<moving_image.ext>
: The image to apply the transformation to. The moving_image will be either a 3-D image with vector voxels or a 4D image with scalar voxels.
<output_image.ext>
: The resulting image. Output will be of the same type as input, but will be resampled to the domain size defined by the -R image.
<MyWarp.ext> <MyAffine.txt>
: Mappings can be stringed together, e.g.: MyAffine.txt MySecondAffine.txt MyWarp.nii.gz MySecondWarp.nii.gz -i MyInverseAffine.txt

OPTIONS

-i
: Will use the inversion of the following affine transform.
-R
: Reference image space that you wish to warp into.
--reslice-by-header
: Equivalient to -i -mh, or -fh -i -mh if used together with -R. It uses the orientation matrix and origin encoded in the image file header.
--tightest-bounding-box
: Computes the tightest bounding box using all the affine transformations. It will be overrided by -R <reference_image.ext> if given.
These options can be used together with -R and are typically not used together with any other transforms.

Interpolation:

--use-NN
: Use Nearest Neighbor Interpolator
--use-BSpline
: Use 3rd order B-Spline Interpolation.
September 2017 WarpTimeSeriesImageMultiTransform 2.1.0