Man pages sections > man1 > abiview

abiview - Display the trace in an ABI sequencer file

ABIVIEW(1e) EMBOSS Manual for Debian ABIVIEW(1e)

NAME

abiview - Display the trace in an ABI sequencer file

SYNOPSIS

abiview -infile infile -outseq seqout -graph xygraph [ -startbase integer] [-endbase  integer] -separate  boolean [-yticks boolean] [-sequence boolean] [-window integer] [-bases string]
abiview -help

DESCRIPTION

abiview is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Data retrieval:Sequence data,Display" command group(s).

OPTIONS

Input section

-infile infile

Output section

-outseq seqout
-graph xygraph
-startbase integer
-endbase integer
Last sequence base to report or display. If the default is set to zero then the value of this is taken as the maximum number of bases.
-separate boolean
Default value: N
-yticks boolean
Default value: N
-sequence boolean
Default value: Y
-window integer
Default value: 40
-bases string
Default value: GATC

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

abiview is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
 
05/11/2012 EMBOSS 6.4.0