Man pages sections > man1 > aevol_misc_extract

aevol - an in silico experimental evolution platform

AEVOL(1) User Manual AEVOL(1)
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NAME

aevol - an in silico experimental evolution platform

SYNOPSIS

aevol_misc_extract -h | --help
 
aevol_misc_extract -V | --version
 
aevol_misc_extract [-r GENER | -p POP_FILE] [-t PHEN_FILE] [-s SEQ_FILE] [-g NUM_GU] [ -b]

DESCRIPTION

Aevol is a simulation platform that allows one to let populations of digital organisms evolve in different conditions and study experimentally the mechanisms responsible for the structuration of the genome and the transcriptome.
aevol_misc_extract
extracts the genotype and/or data about the phenotype of individuals in the provided population and write them into text files easy to parse with e.g. matlab.

OPTIONS

-h, --help
print help, then exit
-V, --version
print version number, then exit
-r GENER
 
read generation GENER from a full aevol backup
-p POP_FILE
 
read the population saved in population file POP_FILE
-t PHEN_FILE
 
extract and save some infos about the phenotypes of the individuals to file PHEN_FILE
-s SEQ_FILE
 
extract and save the sequences of the individuals to file SEQ_FILE
-g num_gu
 
only treat this genetic unit (by default: treat all genetic units)
-b
 
only treat the best individual

SEE ALSO

ae_misc_lineage, aevol_create, aevol_modify, aevol_propagate, aevol_run
July 2014 aevol 4.4