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antsAlignOrigin - part of ANTS registration suite

ANTSALIGNORIGIN(1) User Commands ANTSALIGNORIGIN(1)

NAME

antsAlignOrigin - part of ANTS registration suite

DESCRIPTION

COMMAND:

antsAlignOrigin
antsAlignOrigin, applied to an input image, transforms it according to a reference image and a transform (or a set of transforms).

OPTIONS:

-d, --dimensionality 2/3
This option forces the image to be treated as a specified-dimensional image. If not specified, antsWarp tries to infer the dimensionality from the input image.
-i, --input inputFileName
Currently, the only input objects supported are image objects. However, the current framework allows for warping of other objects such as meshes and point sets.
-r, --reference-image imageFileName
For warping input images, the reference image defines the spacing, origin, size, and direction of the output warped image.
-o, --output warpedOutputFileName
[transform,alignedImage]
One can either output the warped image or, if the boolean is set, one can print out the displacement field based on thecomposite transform and the reference image.
-h
Print the help menu (short version). <VALUES>: 0
--help
Print the help menu. <VALUES>: 1, 0
September 2017 antsAlignOrigin 2.1.0