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bam2wig - convert BAM to WIG

BAM2WIG(1)   BAM2WIG(1)

NAME

bam2wig - convert BAM to WIG

SYNOPSIS

bam2wig [-r region] [-t trackname] <in.bam>

OPTIONS

File needs to be sorted by Reference ID (i.e. target name) Use 'samtools sort <in.bam>' to such effect.

Parameters:

-r
Allows to specify a target region, e.g. 'chr3L:10-250' This option can only be used if an index file exists, see: samtools index
 
-t
string provided as track name

AUTHORS

AUGUSTUS was written by M. Stanke, O. Keller, S. König, L. Gerischer and L. Romoth.

ADDITIONAL DOCUMENTATION

An exhaustive documentation can be found in the file /usr/share/augustus/README.TXT.