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bedops-starch - manual page for bedops-starch 2.4.26+dfsg

BEDOPS-STARCH(1) User Commands BEDOPS-STARCH(1)

NAME

bedops-starch - manual page for bedops-starch 2.4.26+dfsg

DESCRIPTION

starch
citation: http://bioinformatics.oxfordjournals.org/content/28/14/1919.abstract binary version: 2.4.26 (creates archive version: 2.2.0) authors: Alex Reynolds and Shane Neph
USAGE: starch [ --note="foo bar..." ]
[ --bzip2 | --gzip ] [ --omit-signature ] [ --report-progress=N ] [ --header ] [ <unique-tag> ] <bed-file>
* BED input must be sorted lexicographically (e.g., using BEDOPS sort-bed). * Please use '-' to indicate reading BED data from standard input. * Output must be directed to a regular file. * The bzip2 compression type makes smaller archives, while gzip extracts
faster.
Process Flags -------------------------------------------------------------------------- --note="foo bar..." Append note to output archive metadata (optional).
--bzip2 | --gzip
Specify backend compression type (optional, default is bzip2).
--omit-signature
Skip generating per-chromosome data integrity signature (optional, default is to generate signature).
--report-progress=N
Report compression progress every N elements per chromosome to standard error stream (optional)
--header
Support BED input with custom UCSC track, SAM or VCF headers, or generic comments (optional).
<unique-tag>
Optional. Specify unique identifier for transformed data.
--version
Show binary version.
--help
Show this usage message.

SEE ALSO

The full documentation for bedops-starch is maintained as a Texinfo manual. If the info and bedops-starch programs are properly installed at your site, the command
info bedops-starch
should give you access to the complete manual.
June 2017 bedops-starch 2.4.26+dfsg