Man pages sections > man1 > bowtie

bowtie-align - ultrafast memory-efficient short read aligner

BOWTIE-ALIGN(1) User Commands BOWTIE-ALIGN(1)

NAME

bowtie-align - ultrafast memory-efficient short read aligner

DESCRIPTION

usage: bowtie [-h] [-b | -i] [--verbose] [--debug] [--large-index]
[--index INDEX]

optional arguments:

-h, --help
show this help message and exit
-b, --build
-i, --inspect
--verbose
--debug
--large-index
--index INDEX
64-bit Built on Debian-reproducible Thu, 19 Oct 2017 20:35:11 +0200 Compiler: gcc version 7.2.0 Options: -O3 -Wl,--hash-style=both -DWITH_TBB -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=.=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=.=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -Wl,-z,relro -Wl,-z,now Sizeof {int, long, long long, void*, size_t, off_t}: {4, 8, 8, 8, 8, 8}
October 2017 bowtie-align version 1.2.1.1