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bowtie2-inspect - wrapper for bowtie2-inspect-* index

BOWTIE2-INSPECT(1) User Commands BOWTIE2-INSPECT(1)

NAME

bowtie2-inspect - wrapper for bowtie2-inspect-* index

SYNOPSIS

bowtie2-inspect [ options]* <bt2_base>

DESCRIPTION

Bowtie 2 version 2.3.3.1 by Ben Langmead (langmea@cs.jhu.edu, www.cs.jhu.edu/~langmea)
<bt2_base>
bt2 filename minus trailing .1.bt2/.2.bt2
By default, prints FASTA records of the indexed nucleotide sequences to standard out. With -n, just prints names. With -s, just prints a summary of the index parameters and sequences.

OPTIONS

--large-index
force inspection of the 'large' index, even if a 'small' one is present.
-a/--across <int>
Number of characters across in FASTA output (default: 60)
-n/--names
Print reference sequence names only
-s/--summary
Print summary incl. ref names, lengths, index properties
-v/--verbose
Verbose output (for debugging)
-h/--help
print detailed description of tool and its options
--help
print this usage message
October 2017 bowtie2-inspect 2.3.3.1