Man pages sections > man1 > bp_aacomp

bp_aacomp - amino acid composition of protein sequences

BP_AACOMP(1p) User Contributed Perl Documentation BP_AACOMP(1p)

NAME

bp_aacomp - amino acid composition of protein sequences

SYNOPSIS

  bp_aacomp [-f/--format FORMAT] [-h/--help] filename
  or
  bp_aacomp [-f/--format FORMAT] < filename
  or
  bp_aacomp [-f/--format FORMAT] -i filename

DESCRIPTION

This scripts prints out the count of amino acids over all protein sequences from the input file.

OPTIONS

The default sequence format is fasta.
The sequence input can be provided using any of the three methods:
unnamed argument
  bp_aacomp filename
    
named argument
  bp_aacomp -i filename
    
standard input
  bp_aacomp < filename
    

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
  https://github.com/bioperl/bioperl-live/issues

AUTHOR - Jason Stajich

Email jason@bioperl.org

HISTORY

Based on aacomp.c from an old version of EMBOSS
2017-08-30 perl v5.26.0