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bp_make_mrna_protein - Convert an input mRNA/cDNA sequence into protein

BP_MAKE_MRNA_PROTEIN(1p) User Contributed Perl Documentation BP_MAKE_MRNA_PROTEIN(1p)

NAME

bp_make_mrna_protein - Convert an input mRNA/cDNA sequence into protein

DESCRIPTION

Convert an input mRNA/cDNA sequence into protein using translate()
  -f/--frame           Specifies frame [0,1,2]
One can also specify:
  -t/--terminator      Stop Codon character (defaults to '*')
  -u/--unknown         Unknown Protein character (defaults to 'X')
  -cds/--fullcds       Expected Full CDS (with start and Stop codon)
  -throwOnError        Throw error if no Full CDS (defaults to 0)
  -if/--format         Input format (defaults to FASTA/Pearson)
  -of/--format         Output format (defaults to FASTA/Pearson)
  -o/--output          Output Filename (defaults to STDOUT)
  -i/--input           Input Filename (defaults to STDIN)
  -ct/--codontable     Codon table to use (defaults to '1')
See Bio::PrimarySeq for more information on codon tables and the translate() method

AUTHOR - Jason Stajich

  Email jason-at-bioperl-dot-org
2017-08-30 perl v5.26.0