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bp_meta_gff.pl - Get/set Bio::DB::GFF meta-data

BP_META_GFF(1p) User Contributed Perl Documentation BP_META_GFF(1p)

NAME

bp_meta_gff.pl - Get/set Bio::DB::GFF meta-data

SYNOPSIS

  # set the following meta data values
  % bp_meta_gff.pl -d testdb tag1=value1 tag2=value2
  # get the indicated meta data value
  % bp_meta_gff.pl -d testdb tag1 tag2

DESCRIPTION

This script gets or sets metadata in a Bio::DB::GFF database. Not all adaptors support this operation! To set a series of tags, pass a set of tag=value pairs to the script. To get the contents of a series of tags, pass the bare tag names.
The output from the get operation will be an easily parseable set of tag=value pairs, one per line.

COMMAND-LINE OPTIONS

Command-line options can be abbreviated to single-letter options. e.g. -d instead of --database.
   --database <dsn>      Mysql database name (default dbi:mysql:test)
   --adaptor <adaptor>   Mysql adaptor (default dbi::mysqlopt)
   --user    <user>      Username for mysql authentication
   --pass    <password>  Password for mysql authentication

SEE ALSO

Bio::DB::GFF

AUTHOR

Lincoln Stein, lstein@cshl.org
Copyright (c) 2002 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.
2017-08-30 perl v5.26.0