run_neighbor - run Phylip's 'neighbor' program through Bioperl
run_neighbor [-i inputfile] [-o outfilename]
Provide an matrix file to run neighbor on. File should be named of the forma
file.matrix or file.protdist (the ending doesn't matter, but the program
expects a file in the form of (\S+)\.(\S+).
This will run the application 'neighbor' to build a Neighbor-Joining tree from a
protein distance matrix.
Jason Stajich, jason-AT-open-bio-DOT-org