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br_biofetch.rb — biofetch client

BIORUBY(1) General Commands Manual BIORUBY(1)

NAME

br_biofetch.rb — biofetch client

SYNOPSIS

br_biofetch.rb [-s server] [db] [id] [style] [format]

DESCRIPTION

This manual page documents briefly the br_biofetch.rb.
br_biofetch.rb is a very simple biofetch client. You can connect to a biofetch server and retrieve database entries including sequence information.

OPTIONS

-s
Specify the URL of the BioFetch CGI (default is http://bioruby.org/cgi-bin/biofetch.rb)
-e
Use the EBI server at http://www.ebi.ac.uk/cgi-bin/dbfetch
-r
Use the BioRuby server at http://bioruby.org/cgi-bin/biofetch.rb
db
Database name. This includes options like refseq, genbank, embl, swissprot, etc. This option depends on which biofetch server you are using.
id
entry id
style
´raw´ or ´html´ (default is ´raw´)
format
Output format ('default, 'fasta', 'etc')

SEE ALSO

bar (1), baz (1).

AUTHOR

This manual page was written by David Nusinow dnusinow@debian.org for the Debian system (but may be used by others). Permission is granted to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by the Free Software Foundation.
 
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
 
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