Man pages sections > man1 > cai

cai - Calculate codon adaptation index

CAI(1e) EMBOSS Manual for Debian CAI(1e)

NAME

cai - Calculate codon adaptation index

SYNOPSIS

cai -seqall seqall -cfile codon -outfile outfile
cai -help

DESCRIPTION

cai is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Codon usage" command group(s).

OPTIONS

Input section

-seqall seqall
-cfile codon
Default value: Eyeast_cai.cut

Output section

-outfile outfile

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

cai is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
 
05/11/2012 EMBOSS 6.4.0