Man pages sections > man1 > chainsaw

chainsaw - Cut a gene tree based on a reconciliation

chainsaw(1) General Commands Manual chainsaw(1)

NAME

chainsaw - Cut a gene tree based on a reconciliation

SYNOPSIS

chainsaw [ OPTIONS] reconciled-gene-tree species-tree
 

DESCRIPTION

reconciled-gene-tree is the filename of the file containing trees in PRIME format. Notice that the node id is optional and if left out all species nodeswill be used recursively.
 
species-tree is the species tree
 

OPTIONS

--help
Display help (this text).
-V, --version
Print version and exit
-g, --guest-tree-format primeOrHybrid|inputxml
The input format. Default is primeOrHybrid
-h, --host-tree-format primeOrHybrid|inputxml
The input format of the host tree. Default is primeOrHybrid
-x, --node-name=STRING
A named species node to cut at
-i, --node-id=INT
The numerical id of a species node to cut at
 

EXIT STATUS

0
Successful program execution.
1
Some error occurred
 

URL

The prime-phylo home page: http://prime.sbc.su.se
 

SEE ALSO

primeDTLSR(1), primeDLRS(1), primeGEM(1), showtree(1), reconcile(1), reroot(1), tree2leafnames(1), treesize(1)
13 Mar, 2012 prime-phylo 1.0.11