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checktargetsortedness - check BAM file for sortedness

CHECKTARGETSORTEDNESS(1)   CHECKTARGETSORTEDNESS(1)

NAME

checktargetsortedness - check BAM file for sortedness

SYNOPSIS

checkTargetSortedness infile.bam

OPTIONS

'infile.bam' is the name of the BAM file to check for sortedness. The program will output a short message describing the sortedness status of the file.

AUTHORS

AUGUSTUS was written by M. Stanke, O. Keller, S. König, L. Gerischer and L. Romoth.

ADDITIONAL DOCUMENTATION

An exhaustive documentation can be found in the file /usr/share/augustus/README.TXT.