fibxform - Apply coordinate transformations to point coordinates in .fib file.
A file with fiber tracking results from the UNC Fiber Tracking tool is read from
Standard Input and one or more (concatenated) coordinate transformations are
applied to all fiber point coordinates. The result is written to Standard
Output, again in UNC fiber file format.
- Write list of basic command line options to standard
- Write complete list of basic and advanced command line
options to standard output.
- Write list of command line options to standard output in
- Write man page source in 'nroff' markup to standard
- Write toolkit version to standard output.
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads
- --inversion-tolerance <double>
- Numerical tolerance of B-spline inversion in mm. Smaller
values will lead to more accurate inversion, but may increase failure
rate. [Default: 0.001]
- --source-image <image-path>
- Set source image of the transformation (i.e., an image
defining the space in which fiber tracking was performed) to correct for
differences in orientation and coordinate space. [Default:
- --target-image <image-path>
- Set target image of the transformation (i.e., the image
that the fiber track points are mapped into) to correct for differences in
orientation and coordinate space. [Default: NONE]
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis,
Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
Report bugs at http://nitrc.org/projects/cmtk/
CMTK is developed with support from the NIAAA under Grant AA021697, National
Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data
Integration Component. From April 2009 through September 2011, CMTK
development and maintenance was supported by the NIBIB under Grant