Man pages sections > man1 > cmtk-lsba

lsba - Local voting.

lsba(1) The Computational Morphometry Toolkit lsba(1)

NAME

lsba - Local voting.

SYNOPSIS

lsba [options] targetImage atlasIntensity1 atlasLabels1 [atlasIntensity2 atlasLabels2 [...]]

DESCRIPTION

This tool combines multiple binary segmentations from co-registered and reformatted atlases using locally-weighted Shape-Based Averaging.

OPTIONS

Global Toolkit Options (these are shared by all CMTK tools)

--help
Write list of basic command line options to standard output.
--help-all
Write complete list of basic and advanced command line options to standard output.
--wiki
Write list of command line options to standard output in MediaWiki markup.
--man
Write man page source in 'nroff' markup to standard output.
--version
Write toolkit version to standard output.
--echo
Write the current command line to standard output.
--verbose-level <integer>
Set verbosity level.
--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Input Options

--set-padding-value <double>
Set padding value for input intensity images. Pixels with this value will be ignored. [Default: disabled]

Label Combination Options

--patch-radius <integer>
Radius of image patch (in pixels) used for local similarity computation. [Default: 5]
--search-radius <integer>
Search radius for local image patch matching. The algorithm finds the best-matching patch within this radius by exhaustive search. [Default: 0]
--no-local-outliers
Detect and exclude local outliers in the Shape Based Averaging procedure.
--no-global-outliers
Detect and exclude global outliers by removing poorly correlated atlases prior to local SBA procedure.

Output Options

--output <string>, -o <string>
File system path for the output image. [Default: lsbo.nii ]

AUTHORS

Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

LICENSE

http://www.fsf.org/licensing/licenses/gpl.html

BUGS

Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.
Sep 11 2017 CMTK 3.3.1