make_initial_affine - Initialize affine transformation
ReferenceImage FloatingImage OutputXform
Compute initial affine transformation by aligning centers of mass or principal
- Write list of basic command line options to standard
- Write complete list of basic and advanced command line
options to standard output.
- Write list of command line options to standard output in
- Write man page source in 'nroff' markup to standard
- Write command line syntax specification in XML markup (for
- Write toolkit version to standard output.
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads
- Mode selection for initialization Supported values:
"principal-axes", "identity", where the default is
"direction-vectors", or use one of the following:
- Alignment based on image direction vectors [This is the
- Alignment based on centers of mass (translation only)
- Alignment based on principal axes
- Create only an identity transformation
- --center-xform, -C
- Set transformation center (for rotation, scale) to center
of reference image.
- Write transformation between the native image spaces,
rather than in CMTK standard RAS space. This is the default when running
this tool as a Slicer plugin.
- --db <string>
- Path to image/transformation database that should be
updated with the newly transformation from reference to floating image.
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis,
Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
Report bugs at http://nitrc.org/projects/cmtk/
CMTK is developed with support from the NIAAA under Grant AA021697, National
Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data
Integration Component. From April 2009 through September 2011, CMTK
development and maintenance was supported by the NIBIB under Grant