Man pages sections > man1 > cmtk-mk_analyze_hdr

mk_analyze_hdr - Make Analyze header file

mk_analyze_hdr(1) The Computational Morphometry Toolkit mk_analyze_hdr(1)

NAME

mk_analyze_hdr - Make Analyze header file

SYNOPSIS

mk_analyze_hdr [options] [output.nii]

DESCRIPTION

Make header file according Analzye 7.5 format based on user-supplied parameters for geometry, data type, orientation, etc.

OPTIONS

Global Toolkit Options (these are shared by all CMTK tools)

--help
Write list of basic command line options to standard output.
--help-all
Write complete list of basic and advanced command line options to standard output.
--wiki
Write list of command line options to standard output in MediaWiki markup.
--man
Write man page source in 'nroff' markup to standard output.
--version
Write toolkit version to standard output.
--echo
Write the current command line to standard output.
--verbose-level <integer>
Set verbosity level.
--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Main Options

--dims <string>, -D <string>
Set dimensions in voxels
--voxel <string>, -V <string>
Set voxel size in [mm]
--offset <float>, -O <float>
Binary data file offset [Default: disabled]
--byte, -b
8 bits, unsigned (this is the default)
--char, -c
8 bits, signed
--short, -s
16 bits, signed
--ushort, -u
16 bits, unsigned
--int, -i
32 bits signed
--float, -f
32 bits floating point
--double, -d
64 bits floating point
 
--big-endian, -B
Big endian data [This is the default]
--little-endian, -L
Little endian data
--axial
Set slice orientation to axial (this is the default)
--axial-flip
Set slice orientation to reverse axial
--sagittal
Set slice orientation to sagittal
--sagittal-flip
Set slice orientation to reverse sagittal
--coronal
Set slice orientation to corona;
--coronal-flip
Set slice orientation to reverse coronal
--legacy
Legacy mode; do not write 'SRI1' tag into header
--SRI1
Force 'SRI1' tag even if not present in imported header
--import <string>, -I <string>
Import data from given header file. [Default: NONE]
--description <string>
Set description string [max. 80 characters] [Default: NONE]

AUTHORS

Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

LICENSE

http://www.fsf.org/licensing/licenses/gpl.html

BUGS

Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.
Sep 11 2017 CMTK 3.3.1