Man pages sections > man1 > cmtk-probe

probe - Probe image data.

probe(1) The Computational Morphometry Toolkit probe(1)

NAME

probe - Probe image data.

SYNOPSIS

probe InputImage

DESCRIPTION

This tool prints pixel values or symbolic labels at a list of user-provided image coordinates.

OPTIONS

Global Toolkit Options (these are shared by all CMTK tools)

--help
Write list of basic command line options to standard output.
--help-all
Write complete list of basic and advanced command line options to standard output.
--wiki
Write list of command line options to standard output in MediaWiki markup.
--man
Write man page source in 'nroff' markup to standard output.
--version
Write toolkit version to standard output.
--echo
Write the current command line to standard output.
--verbose-level <integer>
Set verbosity level.
--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Main Options

--coordinates
Coordinate specification mode. Supported values: "absolute", "indexed", "relative", "physical", where the default is "absolute", or use one of the following:
--absolute
Use absolute volume coordinates. For each dimension, the valid range is [0,FOV]. [This is the default]
--indexed
Use grid indexes to specify coordinates. For each dimension, the valid value range is [0,Dims-1].
--relative
Use relative volume coordinates. For each dimension, the valid range is [0,1].
--physical
Use physical volume coordinates. Each given location is transformed into image coordinates via the inverse of the images's index-to-physical space matrix.
--interpolation
Image interpolation method. Supported values: "nn", "linear", "cubic", "pv", "sinc-cosine", "sinc-hamming", where the default is "nn", or use one of the following:
--nn
Nearest neighbor interpolation [This is the default]
--linear
Trilinear interpolation
--cubic
Tricubic interpolation
--pv
Partial volume interpolation
--sinc-cosine
Sinc interpolation with cosine window
--sinc-hamming
Sinc interpolation with Hamming window
--sinc-window-radius <integer>
Window radius for Sinc interpolation [Default: 3]
--no-reorient
Disable image reorientation into RAS alignment.

AUTHORS

Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

LICENSE

http://www.fsf.org/licensing/licenses/gpl.html

BUGS

Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.
Sep 11 2017 CMTK 3.3.1