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similarity - Image similarity

similarity(1) The Computational Morphometry Toolkit similarity(1)

NAME

similarity - Image similarity

SYNOPSIS

similarity Image0 Image1

DESCRIPTION

Compute similarity measures such as intensity difference or label overlaps between two images.

OPTIONS

Global Toolkit Options (these are shared by all CMTK tools)

--help
Write list of basic command line options to standard output.
--help-all
Write complete list of basic and advanced command line options to standard output.
--wiki
Write list of command line options to standard output in MediaWiki markup.
--man
Write man page source in 'nroff' markup to standard output.
--version
Write toolkit version to standard output.
--echo
Write the current command line to standard output.
--verbose-level <integer>
Set verbosity level.
--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Main Options

--outside-bg
Assume voxels outside floating image to be background
--pad0 <double>
Define padding value for reference image [Default: disabled]
--pad1 <double>
Define padding value for floating image [Default: disabled]
--grey, -g
Image pixels are intensities [This is the default]
--labels, -l
Image pixels are labels
--mask <string>, -m <string>
Mask file for optional region-based analysis [Default: NONE]
--force-max <integer>
Force maximum label value [Default: 0]
--histogram-text-file <string>
Output file name for histogram (plain text format). [Default: NONE]

AUTHORS

Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

LICENSE

http://www.fsf.org/licensing/licenses/gpl.html

BUGS

Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.
Sep 11 2017 CMTK 3.3.1