Man pages sections > man1 > cmtk-stream_pixels

stream_pixels - Stream pixel data from one or more images to Standard Output.

stream_pixels(1) The Computational Morphometry Toolkit stream_pixels(1)

NAME

stream_pixels - Stream pixel data from one or more images to Standard Output.

SYNOPSIS

stream_pixels ImagePaths

DESCRIPTION

This tool reads one or more images and writes all their pixels to standard output in binary form. Optionally, each image can be reoriented to a specified anatomical orientation and/or converted to a different data type. This is useful for piping image data through a pipeline, e.g., the Camino DTI toolkit.

OPTIONS

Global Toolkit Options (these are shared by all CMTK tools)

--help
Write list of basic command line options to standard output.
--help-all
Write complete list of basic and advanced command line options to standard output.
--wiki
Write list of command line options to standard output in MediaWiki markup.
--man
Write man page source in 'nroff' markup to standard output.
--version
Write toolkit version to standard output.
--echo
Write the current command line to standard output.
--verbose-level <integer>
Set verbosity level.
--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Main Options

--reorient <string>
Reorient all images to anatomy-based standard orientation, e.g., RAS or LPS for axial. Default: no reorientation. [Default: NONE]
--change-endian
Change endianness. Default: native endianness.
--convert
Convert data to new scalar type. Default: no conversion. Supported values: "char", "byte", "short", "ushort", "int", "uint", "float", "double", or use one of the following:
--char
8 bits, signed integer
--byte
8 bits, unsigned integer
--short
16 bits, signed integer
--ushort
16 bits, unsigned integer
--int
32 bits, signed integer
--uint
32 bits, unsigned integer
--float
32-bits, single-precision floating point
--double
64 bits, double-precision floating point

AUTHORS

Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

LICENSE

http://www.fsf.org/licensing/licenses/gpl.html

BUGS

Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.
Sep 11 2017 CMTK 3.3.1