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volume_injection - Volume injection

volume_injection(1) The Computational Morphometry Toolkit volume_injection(1)

NAME

volume_injection - Volume injection

SYNOPSIS

volume_injection [options] refImage xform0 inImage0 [xform1 inImage1 ...]

DESCRIPTION

Reconstruction a high-resolution volume from multiple co-registered (low-resolution) images using forward volume injection

OPTIONS

Global Toolkit Options (these are shared by all CMTK tools)

--help
Write list of basic command line options to standard output.
--help-all
Write complete list of basic and advanced command line options to standard output.
--wiki
Write list of command line options to standard output in MediaWiki markup.
--man
Write man page source in 'nroff' markup to standard output.
--version
Write toolkit version to standard output.
--echo
Write the current command line to standard output.
--verbose-level <integer>
Set verbosity level.
--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Input Options

--exclude-first-image, -x
Exclude first image from reconstruction as a separate registration target image)
--pass-weight <string>, -W <string>
Set contribution weight for a pass in the form 'pass:weight'

Reconstruction Grid Options

--recon-grid <string>
Define reconstruction grid as Nx,Ny,Nz:dX,dY,dZ[:Ox,Oy,Oz] (dims:pixel:offset)
--recon-grid-path <string>, -R <string>
Give path to grid that defines reconstructed image grid [including offset] [Default: NONE]
--crop <string>
Crop reference to pixel region x0,y0,z1:x1,y1,z1

Volume Injection Options

--isotropic-injection
Use isotropic volume injection [default: scaled with pass image pixel size per dimension]
--injection-kernel-sigma <double>, -S <double>
Gauss contribution [Default: 1]
--injection-kernel-radius <integer>, -r <integer>
VolumeInjectionRadius of affected pixel [Default: 0]

Output Options

--output <string>, -o <string>
Output image path [Default: volume_injection.nii ]
--write-images-as-float, -F
Write output images as floating point [default: same as input]

AUTHORS

Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

LICENSE

http://www.fsf.org/licensing/licenses/gpl.html

BUGS

Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.
Sep 11 2017 CMTK 3.3.1