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csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files

CSV2MIPE(1) User Contributed Perl Documentation CSV2MIPE(1)

NAME

csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files
based on MIPE version v1.1
arguments: * tab-delimited file with PCR-level data
* tab-delimited file with SNP-level data
* tab-delimited file with assay-level data
  Columns in file with PCR-level data:
    pcr_id
    pcr_modified (might be multiple, divided by semi-colon ";")
    pcr_project (might be multiple, divided by semi-colon ";")
    pcr_researcher (might be multiple, divided by semi-colon ";")
    pcr_species
    source_type
    source_id
    design_seq
    primer1_oligo
    primer1_seq
    primer1_tm
    primer2_oligo
    primer2_seq
    primer2_tm
    design_remark (might be multiple, divided by semi-colon ";")
    use_seq
    use_revcomp
    use_remark (might be multiple, divided by semi-colon ";")
    pcr_remark (might be multiple, divided by semi-colon ";")
  Columns in file with SNP-level data:
    pcr_id
    snp_id
    snp_pos
    snp_amb
    snp_remark (might be multiple, divided by semi-colon ";")
  Columns in file with assay-level data:
    pcr_id
    snp_id
    assay_id
    assay_type
    assay_enzyme
    assay_oligo
    assay_specific
    assay_tail
    assay_strand
    assay_remark (might be multiple, divided by semi-colon ";")

SYNOPSIS

csv2mipe.pl <pcr_file.csv> <snp_file.csv> <assay_file.csv>

ADDITIONAL INFO

See http://mipe.sourceforge.net

AUTHOR

Jan Aerts (jan.aerts@bbsrc.ac.uk)
2016-01-11 perl v5.22.1