Man pages sections > man1 > daligner

daligner - local alignment discovery between long nucleotide sequencing reads

DALIGNER(1) General Commands Manual DALIGNER(1)

NAME

daligner - local alignment discovery between long nucleotide sequencing reads

SYNOPSIS

daligner [options] files...

DESCRIPTION

These tools permit one to find all significant local alignments between reads encoded in a Dazzler database. The assumption is that the reads are from a Pacific Biosciences RS II long read sequencer. That is, the reads are long and noisy, up to 15% on average.

OPTIONS

For a complete description of available commands and their options, see /usr/share/doc/daligner/README.md
October 2016 Debian Sid