Man pages sections > man1 > dbiblast

dbiblast - Index a BLAST database

DBIBLAST(1e) EMBOSS Manual for Debian DBIBLAST(1e)

NAME

dbiblast - Index a BLAST database

SYNOPSIS

dbiblast -dbname string -directory directory -filenames  string -release string -date string -seqtype list -blastversion list -fields list -exclude string -sortoptions string -maxindex  integer -systemsort  boolean -cleanup  boolean -sourcefile  boolean -outfile  outfile -indexoutdir  outdir
dbiblast -help

DESCRIPTION

dbiblast is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Utils:Database indexing" command group(s).

OPTIONS

Input section

-dbname string
-directory directory
Default value: .
-filenames string
Default value: $(dbname)

Required section

-release string
Default value: 0.0
-date string
Default value: 00/00/00
-seqtype list
Default value: unknown
-blastversion list
Default value: unknown

Advanced section

-fields list
Default value: acc
-exclude string
-sortoptions string
Sort options, typically '-T .' to use current directory for work files and '-k 1,1' to force GNU sort to use the first field Default value: -T . -k 1,1
-maxindex integer
-systemsort boolean
Default value: Y
-cleanup boolean
Default value: Y
-sourcefile boolean

Output section

-outfile outfile
-indexoutdir outdir
Default value: .

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

dbiblast is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
 
05/11/2012 EMBOSS 6.4.0