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debruijn - de Bruijn sequence generator

DEBRUIJN(1) NCBI Tools User's Manual DEBRUIJN(1)

NAME

debruijn - de Bruijn sequence generator

SYNOPSIS

debruijn [ -] -a str -n k

DESCRIPTION

debruijn generates (on standard output) a string over the specified alphabet containing every possible word (substring) of the specified length exactly once. Note: Substrings are not taken to wrap around, so the first k-1 characters repeat at the end.

OPTIONS

A summary of options is included below.
-
Print usage message.
-a str
Alphabet (supply ncbistdaa or ncbi2na for standard alphabets, or supply your own alphabet).
-n k
Word size.

AUTHOR

The National Center for Biotechnology Information.
2004-02-07 NCBI