Man pages sections > man1 > dotpath

dotpath - Draw a non-overlapping wordmatch dotplot of two sequences

DOTPATH(1e) EMBOSS Manual for Debian DOTPATH(1e)

NAME

dotpath - Draw a non-overlapping wordmatch dotplot of two sequences

SYNOPSIS

dotpath -asequence sequence -bsequence  sequence -wordsize  integer [-overlaps  boolean] [-boxit boolean] -graph graph
dotpath -help

DESCRIPTION

dotpath is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Dot plots" command group(s).

OPTIONS

Input section

-asequence sequence
-bsequence sequence

Required section

-wordsize integer
Default value: 4

Output section

-overlaps boolean
Displays the overlapping matches (in red) as well as the minimal set of non-overlapping matches Default value: N
-boxit boolean
Default value: Y
-graph graph

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

dotpath is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
 
05/11/2012 EMBOSS 6.4.0