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ecogrep - filtering ecoPCR result based on taxonomic id filter and regular

ECOGREP(1) User Commands ECOGREP(1)

NAME

ecogrep - filtering ecoPCR result based on taxonomic id filter and regular expression pattern

SYNOPSIS

ecogrep [options] filename

DESCRIPTION

ecoPCR is an electronic PCR software developed by LECA and Helix-Project. It helps to estimate Barcode primers quality.
This program belongs to the exoPCR package.

OPTIONS

-1 : [FIRST] : compare the given pattern with direct strand oligonucleotide
-2
: [SECOND] : compare the given pattern with reverse strand oligonucleotide
-d
: [D]atabase containing taxonomic information
-e
: [E]rrors : max error allowed in pattern match (option-1, -2 and -p) (0 by default)
-p
: [P]attern : oligonucleotide pattern
-h
: [H]elp : print <this> help
-i
: [I]gnore subtree under given taxonomic id
-r
: [R]estrict search to subtree under given taxomic id
-v
: in[V]ert the sense of matching, to select non-matching lines.
argument:
ecoPCR output file name

SEE ALSO

http://www.grenoble.prabi.fr/trac/ecoPCR/
June 2015 ecogrep 0.5.0