Man pages sections > man1 > edamclean

edamclean - Validate and fix EDAM OBO ontology

EDAMCLEAN(1e) EMBOSS Manual for Debian EDAMCLEAN(1e)

NAME

edamclean - Validate and fix EDAM OBO ontology

SYNOPSIS

edamclean -edaminfile infile -taxdirectory  directory -mode  selection -edamoutfile  outfile -logfile  outfile -xmlfile outfile -xmloutdir outdir
edamclean -help

DESCRIPTION

edamclean is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Ontology:EDAM" command group(s).

OPTIONS

Input section

-edaminfile infile
Default value: /homes/jison/edam/EDAM.obo
-taxdirectory directory

Required section

-mode selection
Default value: Report only

Advanced section

Output section

-edamoutfile outfile
Default value: EDAM_out.obo
-logfile outfile
Default value: EDAM_out.log
-xmlfile outfile
Default value: EDAM_out.xml
-xmloutdir outdir

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

edamclean is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
 
05/11/2012 EMBOSS 6.4.0