Man pages sections > man1 > einverted

einverted - Finds inverted repeats in nucleotide sequences

EINVERTED(1e) EMBOSS Manual for Debian EINVERTED(1e)

NAME

einverted - Finds inverted repeats in nucleotide sequences

SYNOPSIS

einverted -sequence seqall -gap integer -threshold integer -match integer -mismatch integer [ -maxrepeat  integer] -outfile  outfile -outseq seqout
einverted -help

DESCRIPTION

einverted is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Repeats,Nucleic:2D structure" command group(s).

OPTIONS

Input section

-sequence seqall

Required section

-gap integer
Default value: 12
-threshold integer
Default value: 50
-match integer
Default value: 3
-mismatch integer
Default value: -4

Additional section

-maxrepeat integer
Maximum separation between the start of repeat and the end of the inverted repeat. Default value: 2000

Output section

-outfile outfile
-outseq seqout
The sequence of the inverted repeat regions without gap characters.

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

einverted is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
 
05/11/2012 EMBOSS 6.4.0