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extractUnmappedSubreads.py - Extract unmapped subreads from a fasta file

EXTRACTUNMAPPEDSUBREADS.PY(1) User Commands EXTRACTUNMAPPEDSUBREADS.PY(1)

NAME

extractUnmappedSubreads.py - Extract unmapped subreads from a fasta file

DESCRIPTION

usage: extractUnmappedSubreads.py [-h] [--verbose] [--version] [--profile]
[--debug]
fasta cmp.h5 [cmp.h5 ...]
Extract unmapped subreads from a fasta file.

positional arguments:

fasta
a fasta file containing all subreads.
cmp.h5
input cmp.h5 files.

optional arguments:

-h, --help
show this help message and exit
--verbose, -v
Set the verbosity level (default: None)
--version
show program's version number and exit
--profile
Print runtime profile at exit (default: False)
--debug
Catch exceptions in debugger (requires ipdb) (default: False)
January 2017 extractUnmappedSubreads.py 0.3.0