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fastaq_caf_to_fastq - Converts a CAF file to FASTQ format

FASTAQ-CAF_TO_FASTQ(1) User Commands FASTAQ-CAF_TO_FASTQ(1)

NAME

fastaq_caf_to_fastq - Converts a CAF file to FASTQ format

DESCRIPTION

usage: fastaq_caf_to_fastq [options] <infile> <outfile>
Converts CAF file to FASTQ format

positional arguments:

infile
Name of input CAF file.
outfile
Name of output FASTQ file

optional arguments:

-h, --help
show this help message and exit
-c, --clip
Use clipping info to clip reads, if present in the input CAF file (as lines of the form "Clipping QUAL start end"). Default is to not clip
-l INT, --min_length INT
Minimum length of sequence to output [1]
June 2017 fastaq 3.15.0