fastaq_caf_to_fastq - Converts a CAF file to FASTQ format
usage: fastaq_caf_to_fastq [options] <infile> <outfile>
Converts CAF file to FASTQ format
- Name of input CAF file.
- Name of output FASTQ file
- -h, --help
- show this help message and exit
- -c, --clip
- Use clipping info to clip reads, if present in the input
CAF file (as lines of the form "Clipping QUAL start end").
Default is to not clip
- -l INT, --min_length INT
- Minimum length of sequence to output