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fastaq_capillary_to_pairs - Converts file of capillary reads to paired and

FASTAQ-CAPILLARY_TO_PAIRS(1) User Commands FASTAQ-CAPILLARY_TO_PAIRS(1)

NAME

fastaq_capillary_to_pairs - Converts file of capillary reads to paired and unpaired files

DESCRIPTION

usage: fastaq_capillary_to_pairs <infile> <outfiles prefix>
Given a file of capillary reads, makes an interleaved file of read pairs (where more than read from same ligation, takes the longest read) and a file of unpaired reads. Replaces the .p1k/.q1k part of read names to denote fwd/rev reads with /1 and /2

positional arguments:

infile
Name of input fasta/q file
outfiles prefix
Prefix of output files

optional arguments:

-h, --help
show this help message and exit
June 2017 fastaq 3.15.0