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fastaq_deinterleave - Splits interleaved paired file into two separate files

FASTAQ-DEINTERLEAVE(1) User Commands FASTAQ-DEINTERLEAVE(1)

NAME

fastaq_deinterleave - Splits interleaved paired file into two separate files

DESCRIPTION

usage: fastaq_deinterleave [options] <infile> <out_fwd> <out_rev>
Deinterleaves sequence file, so that reads are written alternately between two output files

positional arguments:

infile
Name of fasta/q file to be deinterleaved
out_fwd
Name of output fasta/q file of forwards reads
out_rev
Name of output fasta/q file of reverse reads

optional arguments:

-h, --help
show this help message and exit
--fasta_out
Use this to write output as fasta (default is same as input)
June 2017 fastaq 3.15.0