Man pages sections > man1 > fastaq-get_seq_flanking_gaps

fastaq_get_seq_flanking_gaps - Gets the sequences flanking gaps

FASTAQ-GET_SEQ_FLANKING_GAPS(1) User Commands FASTAQ-GET_SEQ_FLANKING_GAPS(1)

NAME

fastaq_get_seq_flanking_gaps - Gets the sequences flanking gaps

DESCRIPTION

usage: fastaq_get_seq_flanking_gaps [options] <infile> <outfile>
Gets the sequences flanking gaps

positional arguments:

infile
Name of input file
outfile
Name of output file

optional arguments:

-h, --help
show this help message and exit
--left INT
Number of bases to get to left of gap [25]
--right INT
Number of bases to get to right of gap [25]
June 2017 fastaq 3.15.0