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fastaq_to_random_subset - Make a random sample of sequences (and optionally

FASTAQ-TO_RANDOM_SUBSET(1) User Commands FASTAQ-TO_RANDOM_SUBSET(1)

NAME

fastaq_to_random_subset - Make a random sample of sequences (and optionally mates as well)

DESCRIPTION

usage: fastaq_to_random_subset [options] <infile> <outfile> <percent>
Takes a random subset of reads from a sequence file and optionally the corresponding read from a mates file. Output is interleaved if mates file given

positional arguments:

infile
Name of input file
outfile
Name of output file
FLOAT
Per cent probability of keeping any given read (pair) in [0,100]

optional arguments:

-h, --help
show this help message and exit
--mate_file MATE_FILE
Name of mates file
--seed INT
Seed for random number generator. If not given, python's default is used
June 2017 fastaq 3.15.0