Man pages sections > man1 > fastq_quality_filter

fastq_quality_filter - Filters sequences based on quality

FASTQ_QUALITY_FILTER(1) User Commands FASTQ_QUALITY_FILTER(1)

NAME

fastq_quality_filter - Filters sequences based on quality

DESCRIPTION

usage: fastq_quality_filter [-h] [-v] [-q N] [-p N] [-z] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.14 by A. Gordon (assafgordon@gmail.com)
[-h]
= This helpful help screen.
[-q N]
= Minimum quality score to keep.
[-p N]
= Minimum percent of bases that must have [-q] quality.
[-z]
= Compress output with GZIP.
[-i INFILE]
= FASTA/Q input file. default is STDIN.
[-o OUTFILE] = FASTA/Q output file. default is STDOUT. [-v] = Verbose - report number of sequences.
If [-o] is specified,
report will be printed to STDOUT.
If [-o] is not specified (and output goes to STDOUT), report will be printed to STDERR.
[-Q N]
= FASTQ ASCII offset. Default is 33.

SEE ALSO

The quality of this automatically generated manpage might be insufficient. It is suggested to visit
http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
to get a better layout as well as an overview about connected FASTX tools.
August 2017 fastq_quality_filter 0.0.14