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fastx_trimmer - FASTA/Q Trimmer

FASTX_TRIMMER(1) User Commands FASTX_TRIMMER(1)

NAME

fastx_trimmer - FASTA/Q Trimmer

DESCRIPTION

usage: fastx_trimmer [-h] [-f N] [-l N] [-t N] [-m MINLEN] [-z] [-v] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.14 by A. Gordon (assafgordon@gmail.com)
[-h]
= This helpful help screen.
[-f N]
= First base to keep. Default is 1 (=first base).
[-l N]
= Last base to keep. Default is entire read.
[-t N]
= Trim N nucleotides from the end of the read.
'-t'
can not be used with '-l' and '-f'.
[-m MINLEN]
= With [-t], discard reads shorter than MINLEN.
[-z]
= Compress output with GZIP.
[-i INFILE]
= FASTA/Q input file. default is STDIN.
[-o OUTFILE] = FASTA/Q output file. default is STDOUT.

SEE ALSO

The quality of this automatically generated manpage might be insufficient. It is suggested to visit
http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
to get a better layout as well as an overview about connected FASTX tools.
August 2017 fastx_trimmer 0.0.14