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fathom - sequence and annotation tool

FATHOM(1) User Commands FATHOM(1)

NAME

fathom - sequence and annotation tool

SYNOPSIS

fathom < ann> <dna> <commands>

OPTIONS

-help
report useful information
-validate [-quiet]
-gene-stats [-errors-ok -nucleotide -dinucleotide]
-categorize <int>
-export <int> [-plus -errors-ok]
-extract <feature> -length <int> -offset <int>
-exon-intron
-split <-number <int> | -training <float> | -GC <float> | -repeat <float>>
-ace-format <-gene-method <string> [-dna -extra <string>]>
-compare-genes <predictions> [-details]
-score-genes <hmm> [-errors-ok]
-filter-genes <hmm> -min-score <float> -min-length <int>
October 2013 fathom 2010-07-28