Man pages sections > man1 > fdnadist

fdnadist - Nucleic acid sequence Distance Matrix program

FDNADIST(1e) EMBOSS Manual for Debian FDNADIST(1e)

NAME

fdnadist - Nucleic acid sequence Distance Matrix program

SYNOPSIS

fdnadist -sequence seqsetall -method list -gamma list -ncategories integer -rate array -categories properties [ -weights properties] -gammacoefficient  float -invarfrac float -ttratio float -freqsfrom toggle -basefreq array [-lower boolean] [ -humanreadable boolean] -outfile  outfile [-printdata  boolean] [-progress  boolean]
fdnadist -help

DESCRIPTION

fdnadist is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Phylogeny:Molecular sequence" command group(s).

OPTIONS

Input section

-sequence seqsetall
File containing one or more sequence alignments
-method list
Default value: F84 distance model
-gamma list
Default value: No distribution parameters used
-ncategories integer
Default value: 1
-rate array
Default value: 1.0
-categories properties
File of substitution rate categories
-weights properties

Additional section

-gammacoefficient float
Default value: 1
-invarfrac float
Default value: 0.0
-ttratio float
Default value: 2.0
-freqsfrom toggle
Default value: Y
-basefreq array
Default value: 0.25 0.25 0.25 0.25
-lower boolean
Default value: N
-humanreadable boolean
Default value: @($(method)==s?Y:N)

Output section

-outfile outfile
-printdata boolean
Default value: N
-progress boolean
Default value: Y

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

fdnadist is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
 
08/11/2010 PHYLIPNEW 3.69+20100721