Man pages sections > man1 > fdnapenny

fdnapenny - Penny algorithm for DNA

FDNAPENNY(1e) EMBOSS Manual for Debian FDNAPENNY(1e)

NAME

fdnapenny - Penny algorithm for DNA

SYNOPSIS

fdnapenny -sequence seqsetall [-weights  properties] [-howoften integer] [-howmany  integer] [-simple boolean] [-outgrno integer] [-thresh toggle] -threshold float -outfile outfile [ -trout toggle] -outtreefile outfile [-printdata  boolean] [-progress  boolean] [-treeprint  boolean] [-stepbox  boolean] [-ancseq boolean]
fdnapenny -help

DESCRIPTION

fdnapenny is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Phylogeny:Molecular sequence" command group(s).

OPTIONS

Input section

-sequence seqsetall
File containing one or more sequence alignments
-weights properties

Additional section

-howoften integer
Default value: 100
-howmany integer
Default value: 1000
-simple boolean
Default value: Y
-outgrno integer
-thresh toggle
Default value: N
-threshold float
Default value: 1.0

Output section

-outfile outfile
-trout toggle
Default value: Y
-outtreefile outfile
-printdata boolean
Default value: N
-progress boolean
Default value: Y
-treeprint boolean
Default value: Y
-stepbox boolean
Default value: N
-ancseq boolean
Default value: N

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

fdnapenny is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
 
08/11/2010 PHYLIPNEW 3.69+20100721