Man pages sections > man1 > fdolpenny

fdolpenny - Penny algorithm Dollo or polymorphism

FDOLPENNY(1e) EMBOSS Manual for Debian FDOLPENNY(1e)

NAME

fdolpenny - Penny algorithm Dollo or polymorphism

SYNOPSIS

fdolpenny -infile discretestates [-weights  properties] [-ancfile  properties] [-thresh  toggle] -threshold float [-howmany integer] [-howoften  integer] [-simple  boolean] [-method list] -outfile outfile [ -trout toggle] -outtreefile outfile [-printdata  boolean] [-progress  boolean] [-treeprint  boolean] [-ancseq  boolean] [-stepbox boolean]
fdolpenny -help

DESCRIPTION

fdolpenny is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Phylogeny:Discrete characters" command group(s).

OPTIONS

Input section

-infile discretestates
File containing one or more data sets
-weights properties
-ancfile properties

Additional section

-thresh toggle
Default value: N
-threshold float
Default value: 1
-howmany integer
Default value: 1000
-howoften integer
Default value: 100
-simple boolean
Default value: Y
-method list
Default value: d

Output section

-outfile outfile
-trout toggle
Default value: Y
-outtreefile outfile
-printdata boolean
Default value: N
-progress boolean
Default value: Y
-treeprint boolean
Default value: Y
-ancseq boolean
Default value: N
-stepbox boolean
Default value: N

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

fdolpenny is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
 
08/11/2010 PHYLIPNEW 3.69+20100721