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ffitch - Fitch-Margoliash and Least-Squares Distance Methods

FFITCH(1e) EMBOSS Manual for Debian FFITCH(1e)

NAME

ffitch - Fitch-Margoliash and Least-Squares Distance Methods

SYNOPSIS

ffitch -datafile distances -intreefile  tree [-matrixtype  list] [-minev boolean] -njumble integer -seed integer [ -outgrno integer] [ -power float] -lengths boolean -negallowed boolean -global boolean [-replicates boolean] -outfile  outfile [-trout toggle] -outtreefile outfile [-printdata  boolean] [-progress  boolean] [-treeprint  boolean]
ffitch -help

DESCRIPTION

ffitch is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Phylogeny:Distance matrix" command group(s).

OPTIONS

Input section

-datafile distances
File containing one or more distance matrices
-intreefile tree

Additional section

-matrixtype list
Default value: s
-minev boolean
Default value: N
-njumble integer
-seed integer
Default value: 1
-outgrno integer
-power float
Default value: 2.0
-lengths boolean
Default value: N
-negallowed boolean
Default value: N
-global boolean
Default value: N
-replicates boolean
Default value: N

Output section

-outfile outfile
-trout toggle
Default value: Y
-outtreefile outfile
-printdata boolean
Default value: N
-progress boolean
Default value: Y
-treeprint boolean
Default value: Y

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

ffitch is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
 
08/11/2010 PHYLIPNEW 3.69+20100721