Man pages sections > man1 > filter_tradis_tags

filter_tradis_tags - bio-tradis: filters a BAM file and outputs reads

FILTER_TRADIS_TAGS(1) User Commands FILTER_TRADIS_TAGS(1)

NAME

filter_tradis_tags - bio-tradis: filters a BAM file and outputs reads

SYNOPSIS

filter_tags -b file.bam -t tag [options]

DESCRIPTION

Filters a BAM file and outputs reads with tag matching -t option

OPTIONS

-f
fastq file with tradis tags attached
-t
tag to search for
-m
number of mismatches to allow when matching tag (optional. default = 0)
-o
output file name (optional. default: <file>.tag.fastq)

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
March 2017 filter_tradis_tags 1.3.1